scVelo
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scVelo
Index
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Index
A
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B
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C
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D
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F
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G
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H
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I
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L
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M
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N
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P
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R
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S
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T
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U
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V
A
adata() (scvelo.tl.VELOVI property)
adata_manager() (scvelo.tl.VELOVI property)
B
bonemarrow() (in module scvelo.datasets)
C
clean_obs_names() (in module scvelo.utils)
cleanup() (in module scvelo.utils)
convert_legacy_save() (scvelo.tl.VELOVI class method)
convert_to_ensembl() (in module scvelo.utils)
convert_to_gene_names() (in module scvelo.utils)
D
dentategyrus() (in module scvelo.datasets)
dentategyrus_lamanno() (in module scvelo.datasets)
deregister_manager() (scvelo.tl.VELOVI method)
device() (scvelo.tl.VELOVI property)
differential_kinetic_test() (in module scvelo.tl)
F
filter_and_normalize() (in module scvelo.pp)
filter_genes() (in module scvelo.pp)
filter_genes_dispersion() (in module scvelo.pp)
forebrain() (in module scvelo.datasets)
G
gastrulation() (in module scvelo.datasets)
gastrulation_e75() (in module scvelo.datasets)
gastrulation_erythroid() (in module scvelo.datasets)
gene_info() (in module scvelo.utils)
get_anndata_manager() (scvelo.tl.VELOVI method)
get_cell_transitions() (in module scvelo.utils)
get_df() (in module scvelo)
get_directional_uncertainty() (scvelo.tl.VELOVI method)
get_elbo() (scvelo.tl.VELOVI method)
get_expression_fit() (scvelo.tl.VELOVI method)
get_extrapolated_state() (in module scvelo.utils)
get_from_registry() (scvelo.tl.VELOVI method)
get_gene_likelihood() (scvelo.tl.VELOVI method)
get_labeling_time_mask() (in module scvelo.inference)
get_labeling_times() (in module scvelo.inference)
get_latent_representation() (scvelo.tl.VELOVI method)
get_latent_time() (scvelo.tl.VELOVI method)
get_marginal_ll() (scvelo.tl.VELOVI method)
get_moments() (in module scvelo.utils)
get_n_neighbors() (in module scvelo.inference)
get_obs_dist_argsort() (in module scvelo.inference)
get_parameters() (in module scvelo.inference)
get_permutation_scores() (scvelo.tl.VELOVI method)
get_rates() (scvelo.tl.VELOVI method)
get_reconstruction_error() (scvelo.tl.VELOVI method)
get_state_assignment() (scvelo.tl.VELOVI method)
get_transition_matrix() (in module scvelo.utils)
get_velocity() (scvelo.tl.VELOVI method)
H
heatmap() (in module scvelo.pl)
hist() (in module scvelo.pl)
history() (scvelo.tl.VELOVI property)
I
is_trained() (scvelo.tl.VELOVI property)
L
latent_time() (in module scvelo.tl)
leastsq() (in module scvelo.utils)
load() (scvelo.tl.VELOVI class method)
load_registry() (scvelo.tl.VELOVI static method)
log1p() (in module scvelo.pp)
louvain() (in module scvelo.tl)
M
merge() (in module scvelo.utils)
module
scvelo
moments() (in module scvelo.pp)
N
neighbors() (in module scvelo.pp)
normalize_per_cell() (in module scvelo.pp)
P
paga() (in module scvelo.pl)
(in module scvelo.tl)
pancreas() (in module scvelo.datasets)
pbmc68k() (in module scvelo.datasets)
pca() (in module scvelo.pp)
proportions() (in module scvelo.pl)
R
rank_dynamical_genes() (in module scvelo.tl)
rank_velocity_genes() (in module scvelo.tl)
read() (in module scvelo)
read_loom() (in module scvelo)
recover_dynamics() (in module scvelo.tl)
register_manager() (scvelo.tl.VELOVI class method)
S
save() (scvelo.tl.VELOVI method)
scatter() (in module scvelo.pl)
score_genes_cell_cycle() (in module scvelo.tl)
scvelo
module
set_figure_params() (in module scvelo)
setup_anndata() (scvelo.tl.VELOVI class method)
show_proportions() (in module scvelo.utils)
simulation() (in module scvelo.datasets)
T
terminal_states() (in module scvelo.tl)
test_bimodality() (in module scvelo.utils)
test_indices() (scvelo.tl.VELOVI property)
to_device() (scvelo.tl.VELOVI method)
train() (scvelo.tl.VELOVI method)
train_indices() (scvelo.tl.VELOVI property)
U
umap() (in module scvelo.tl)
V
validation_indices() (scvelo.tl.VELOVI property)
vcorrcoef() (in module scvelo.utils)
velocity() (in module scvelo.pl)
(in module scvelo.tl)
velocity_clusters() (in module scvelo.tl)
velocity_confidence() (in module scvelo.tl)
velocity_embedding() (in module scvelo.pl)
(in module scvelo.tl)
velocity_embedding_grid() (in module scvelo.pl)
velocity_embedding_stream() (in module scvelo.pl)
velocity_graph() (in module scvelo.pl)
(in module scvelo.tl)
velocity_pseudotime() (in module scvelo.tl)
VELOVI (class in scvelo.tl)
view_anndata_setup() (scvelo.tl.VELOVI method)
view_setup_args() (scvelo.tl.VELOVI static method)
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