scvelo.datasets.gastrulation

scvelo.datasets.gastrulation(file_path='data/Gastrulation/gastrulation.h5ad')

Mouse gastrulation.

Data from Pijuan-Sala et al. (2019).

Gastrulation represents a key developmental event during which embryonic pluripotent cells diversify into lineage-specific precursors that will generate the adult organism.

This data contains the erythrocyte lineage from Pijuan-Sala et al. (2019). The experiment reveals the molecular map of mouse gastrulation and early organogenesis. It comprises transcriptional profiles of 116,312 single cells from mouse embryos collected at nine sequential time points ranging from 6.5 to 8.5 days post-fertilization. It served to explore the complex events involved in the convergence of visceral and primitive streak-derived endoderm.

Returns

Returns adata object