scvelo.tl.rank_dynamical_genes

scvelo.tl.rank_dynamical_genes(data, n_genes=100, groupby=None, copy=False)

Rank genes by likelihoods per cluster/regime.

This ranks genes by their likelihood obtained from the dynamical model grouped by clusters specified in groupby.

Parameters:

• data (AnnData) – Annotated data matrix.

• n_genes (int, optional (default: 100)) – The number of genes that appear in the returned tables.

• groupby (str, list or np.ndarray (default: None)) – Key of observations grouping to consider.

• copy (bool (default: False)) – Return a copy instead of writing to data.

Returns:

rank_dynamical_genes – Structured array to be indexed by group id storing the gene names. Ordered according to scores.

Return type:

.uns