scvelo.pl.proportions¶
-
scvelo.pl.
proportions
(adata, groupby='clusters', layers=None, highlight='unspliced', add_labels_pie=True, add_labels_bar=True, fontsize=8, figsize=(10, 2), dpi=100, use_raw=True, show=True, save=None)¶ Plot pie chart of spliced/unspliced proprtions.
- adata:
AnnData
Annotated data matrix.
- groupby: str (default: ‘clusters’)
Key of observations grouping to consider.
- layers: list of str`(default: `[‘spliced#, ‘unspliced’, ‘ambiguous’])
Specify the layers of count matrices for computing proportions.
- highlight: str (default: ‘unspliced’)
Which proportions to highlight in pie chart.
- add_labels_pie: bool (default: True)
Whether to add percentage labels in pie chart.
- add_labels_bar: bool (default: True)
Whether to add percentage labels in bar chart.
- fontsize: float (default: 8)
Label font size.
- figsize: tuple (default: (10,2))
Figure size.
- dpi: int (default: 80)
Figure dpi.
- use_rawbool (default: True)
Use initial cell sizes before normalization and filtering.
- show: bool (default: True)
Show the plot, do not return axis.
- save: bool or str, optional (default: None)
If True or a str, save the figure. A string is appended to the default filename. Infer the filetype if ending on {‘.pdf’, ‘.png’, ‘.svg’}.
- Returns
Plots the proportions of abundances as pie chart.
- adata: