scvelo.inference.get_labeling_time_mask

scvelo.inference.get_labeling_time_mask(adata, time_key, labeling_times)

Get number of neighbors required to include n_nontrivial_counts counts per labeling time.

See [Weiler et al., 2024].

Parameters:

• adata (AnnData) – AnnData object.

• time_key (str) – Column in adata.obs containing labeling time of each observation.

• labeling_times (List[float]) – List of labeling times.

Return type:

Dictionary with labeling times as keys and masks to subset to relevant observations as values.