scvelo.tl.velocity_confidence

scvelo.tl.velocity_confidence(data, vkey='velocity', copy=False)

Computes confidences of velocities.

scv.tl.velocity_confidence(adata)
scv.pl.scatter(adata, color="velocity_confidence", perc=[2, 98])
https://user-images.githubusercontent.com/31883718/69626334-b6df5200-1048-11ea-9171-495845c5bc7a.png
data: AnnData

Annotated data matrix.

vkey: str (default: ‘velocity’)

Name of velocity estimates to be used.

copy: bool (default: False)

Return a copy instead of writing to adata.

velocity_length: .obs

Length of the velocity vectors for each individual cell

velocity_confidence: .obs

Confidence for each cell