scvelo.tl.rank_dynamical_genes¶
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scvelo.tl.
rank_dynamical_genes
(data, n_genes=100, groupby=None, copy=False)¶ Rank genes by likelihoods per cluster/regime.
This ranks genes by their likelihood obtained from the dynamical model grouped by clusters specified in groupby.
Parameters: - data :
AnnData
Annotated data matrix.
- n_genes : int, optional (default: 100)
The number of genes that appear in the returned tables.
- groupby : str, list or np.ndarray (default: None)
Key of observations grouping to consider.
- copy : bool (default: False)
Return a copy instead of writing to data.
Returns: rank_dynamical_genes (.uns) – Structured array to be indexed by group id storing the gene names. Ordered according to scores.
- data :